name taxID taxRank genomeSize numReads numUniqueReads abundance root 1 no rank 0 4 4 0.0 Bacteria 2 superkingdom 0 2 1 0.0 Chondromyces crocatus 52 species 11778529 1 1 0.0 Planctomycetales 112 order 0 1 0 0.0 Brachyspira hyodysenteriae 159 species 3412921 1 0 0.0 Elizabethkingia meningoseptica 238 species 11983870 3 0 0.0 Chryseobacterium indologenes 253 species 15493344 1 0 0.0 Pseudomonas 286 genus 3949 1 0 0 Pseudomonas fluorescens 294 species 109413009 1 0 0.0 Pseudomonas putida 303 species 75633305 1 0 0.0 Pseudomonas savastanoi pv. phaseolicola 319 leaf 471168 1 0 0.0 Xanthomonas campestris 339 species 5748741 1 1 0.0 Agrobacterium tumefaciens 358 species 14810155 2 0 0 Legionella pneumophila 446 species 157586004 1 0 0.0 Acidiphilium cryptum 524 species 24613 1 0 0.0 Escherichia 561 genus 1447 1 0 0.0 Klebsiella pneumoniae 573 species 987333407 2 0 0.0 [Haemophilus] ducreyi 730 species 43457766 1 1 0.0 Bacteroides thetaiotaomicron 818 species 6708615 2 0 0.0 Desulfovibrio 872 genus 0 1 0 0.0 Acidaminococcus fermentans 905 species 17350 2 0 0.0 uncultured cyanobacterium 1211 species 17126900 2 0 0.0 Micrococcus luteus 1270 species 3497917 3 0 0.0 Staphylococcus haemolyticus 1283 species 11784524 1 1 0.0 Parageobacillus thermoglucosidasius 1426 species 11901798 3 0 0.0 Bacillus thuringiensis 1428 species 132939797 1 1 0.0 Blautia coccoides 1532 species 5138878 1 0 0.0 Clostridium baratii 1561 species 3282379 1 0 0.0 Lactobacillus 1578 genus 0 1 0 0.0 Lactobacillus fermentum 1613 species 22244413 1 0 0.0 Lactobacillus oris 1632 species 3286143 1 0 0.0 Actinomyces naeslundii 1655 species 3301709 1 1 0.0 Arthrobacter 1663 genus 0 1 0 0.0 Bifidobacterium adolescentis 1680 species 4562206 2 0 0.0 Brevibacterium linens 1703 species 8168719 2 2 0.0 Cutibacterium acnes 1747 species 20598407 36 29 0.00012422 Micromonospora 1873 genus 0 1 1 0.0 Plasmid F 2465 species 42167 1 0 0.0 Citrus sinensis 2711 species 73816632 1 0 0.0 Klebsormidium flaccidum 3175 species 376333 2 0 0.0 Persea 3434 genus 0 1 0 0.0 Ficus carica 3494 species 375856 14 6 0 Beta vulgaris subsp. vulgaris 3555 subspecies 72323592 1 1 0.0 Spinacia oleracea 3562 species 71471412 2 0 0.0 Gossypium hirsutum 3635 species 393618677 3 1 0.0 Theobroma cacao 3641 species 384373267 4 3 0.0 Cucumis melo 3656 species 798165105 4 1 0.0 Cucurbita maxima 3661 species 89824804 2 0 0.0 Cucurbita moschata 3662 species 92484825 1 0 0.0 Populus trichocarpa 3694 species 156271188 3 0 0.0 Arabidopsis thaliana 3702 species 500226685 1 1 0.0 Rosaceae 3745 family 0 3 2 0.0 Cajanus 3820 genus 0 1 0 0.0 Glycine max 3847 species 269769302 4 3 0.0 Lupinus angustifolius 3871 species 663787666 7 7 0.0 Medicago truncatula 3880 species 343743562 1 1 0.0 Viscum album 3972 species 732523 1 1 0.0 Ricinus communis 3988 species 57411946 2 0 0.0 Solanaceae 4070 family 0 2 1 0.0 Capsicum 4071 genus 0 1 0 0.0 Capsicum annuum 4072 species 108576791 152 69 0.0 Datura stramonium 4076 species 388865 3 1 0.0 Hyoscyamus niger 4079 species 718422 1 0 0.0 Solanum lycopersicum 4081 species 2022455988 5321 555 0 Solanum peruvianum 4082 species 1429170 3 0 0.0 Solanum chilense 4083 species 1224376 1 0 0.0 Solanum pimpinellifolium 4084 species 1234739 10 3 0.0 Nicotiana 4085 genus 0 2 0 0.0 Nicotiana otophora 4091 species 190500 1 0 0.0 Nicotiana sylvestris 4096 species 104028662 59 3 3.78406e-06 Nicotiana tabacum 4097 species 185703706 151 21 0 Nicotiana tomentosiformis 4098 species 108768907 71 7 0.0 Solanum 4107 genus 0 3 1 0.0 Solanum chacoense 4108 species 330276 33 30 0.000595942 Solanum commersonii 4109 species 823608 19 11 0.0 Solanum melongena 4111 species 908075 2 1 0.0 Solanum nigrum 4112 species 541428 2 2 0.0 Solanum tuberosum 4113 species 92003250 36666 25040 0.00142693 Ipomoea batatas 4120 species 2492793 1 1 0.0 Convolvulus arvensis 4123 species 142636 2 0 0.0 Antirrhinum majus 4151 species 1276139 1 0 0.0 Sesamum 4181 genus 0 1 0 0.0 Sesamum indicum 4182 species 81589325 1 1 0.0 Helianthus annuus 4232 species 192309133 2 2 0.0 Camellia sinensis 4442 species 3957388 1 0 0.0 Poaceae 4479 family 0 2 2 0.0 Oryza 4527 genus 643 1 1 0.0 Saccharum officinarum 4547 species 1981888 2 0 0.0 Secale cereale 4550 species 2724946 1 0 0.0 Triticum aestivum 4565 species 861547435 4 3 0.0 Zea mays 4577 species 255202082 1 1 0.0 Arecaceae 4710 family 0 1 0 0.0 Mucor racemosus 4841 species 218764 2 2 0.0 Cunninghamella elegans 4853 species 59609 1 0 3.97202e-28 Gigaspora margarita 4874 species 578570 1 1 0.0 Rhizophagus intraradices 4876 species 2212018 1 0 0.0 Saccharomycetales 4892 order 0 1 0 0.0 Cyberlindnera jadinii 4903 species 238647 3 1 0.00164951 Penicillium brevicompactum 5074 species 330434 1 0 0.0 Basidiomycota 5204 phylum 0 1 0 0.0 Exidia 5218 genus 0 1 0 0.0 Auricularia 5230 genus 0 2 1 0.0 Tremellales 5234 order 0 1 0 0.0 Tulasnella violea 5241 species 36106 2 2 0.0 Puccinia 5296 genus 0 1 0 0.0 Puccinia graminis 5297 species 237938 1 1 0.0 Physarum polycephalum 5791 species 468611 1 1 0.0 Eimeria tenella 5802 species 15763469 1 1 0.0 Toxoplasma gondii 5811 species 5650688 1 0 0.0 Plasmodium chabaudi 5825 species 194578 1 0 0.0 Plasmodium malariae 5858 species 53422313 2 2 0.0 Colpoda inflata 5980 species 11005 1 0 0.0 Trematoda 6178 class 0 1 0 0.0 Schistosoma japonicum 6182 species 30117121 1 0 0.0 Schistosoma mansoni 6183 species 280991889 3 1 0.0 Schistosoma rodhaini 6188 species 343312182 2 1 0.0 Caenorhabditis elegans 6239 species 253898728 1 1 0.0 Wuchereria bancrofti 6293 species 77279261 1 0 0.0 Angiostrongylus cantonensis 6313 species 253740563 1 0 0.0 Phyllodocida 6348 order 0 1 0 0.0 Cephalopoda 6605 class 0 1 0 0.0 Araneae 6893 order 0 1 1 0.0 Libellulidae 6964 family 0 1 0 0.0 Curculionidae 7042 family 0 1 0 0.0 Diptera 7147 order 0 1 1 0.0 Aedes albopictus 7160 species 122971067 1 1 0.0 Anopheles gambiae 7165 species 55931411 3 0 0.0 Drosophila 7215 genus 0 1 1 0.0 Musca domestica 7370 species 58048113 1 0 0.0 Lucilia cuprina 7375 species 41547103 2 0 0.0 Hymenoptera 7399 order 0 1 0 0.0 Strongylocentrotus purpuratus 7668 species 96914718 1 1 0.0 Chordata 7711 phylum 0 1 0 0.0 Danio rerio 7955 species 1789158798 3 1 0.0 Cyprinus carpio 7962 species 1890397823 8 3 0.0 Oncorhynchus kisutch 8019 species 165203973 3 0 0.0 Salmo salar 8030 species 383967421 1 0 0.0 Oryzias latipes 8090 species 2906808803 4 1 0.0 Paralichthys olivaceus 8255 species 116208699 2 0 0.0 Apteryx australis 8822 species 237759 1 0 0.0 Numida meleagris 8996 species 233750403 5 0 0.0 Gallus gallus 9031 species 447766093 3 2 4.39572e-07 Erinaceus europaeus 9365 species 63155401 1 0 0.0 Callithrix 9481 genus 0 1 0 0.0 Cercopithecidae 9527 family 0 1 0 0.0 Macaca fascicularis 9541 species 936229069 1 1 0.0 Macaca mulatta 9544 species 541681108 1 0 0.0 Pan troglodytes 9598 species 1084058817 10 0 0.0 Pongo 9599 genus 0 1 0 0.0 Homo sapiens 9606 species 6945621015 75 37 1.74193e-07 Canis lupus familiaris 9615 subspecies 360717376 2 0 1.01111e-06 Felis catus 9685 species 250610812 2 0 0.0 Panthera pardus 9691 species 221840904 1 0 0.0 Panthera tigris 9694 species 364300 1 0 0.0 Mesocricetus auratus 10036 species 125033043 1 1 0.0 Mus musculus 10090 species 5402553945 15 3 2.2004e-23 Rattus norvegicus 10116 species 575835472 1 0 0.0 Cavia 10140 genus 14106 1 0 0.0 Escherichia virus phiX174 10847 species 655550 1 0 0.0 Potato virus Y 12216 species 5839118 1 1 0.0 Amborella trichopoda 13333 species 83479423 1 1 0.0 Diospyros 13492 genus 0 1 0 0.0 Solenopsis invicta 13686 species 53245886 1 0 0.0 Aucuba japonica 16901 species 373239 2 0 0.0 Amelanchier 23139 genus 0 1 0 0.0 Crataegus 23159 genus 0 1 0 0.0 Puccinia coronata 27344 species 76762 1 0 0.0025641 Puccinia hordei 27345 species 33681 1 0 0.0 Mermithida 27838 order 0 1 0 0.0 Echinostoma caproni 27848 species 834586601 1 0 0.0 Streptococcus mitis 28037 species 6265529 2 2 0.0 Sphingomonas sp. 28214 species 504441 1 0 0.0 Betaproteobacteria 28216 class 0 1 0 0.0 Anolis carolinensis 28377 species 128618658 1 0 0.0 Hydrolea ovata 28524 species 29486 1 0 0.0 Solanum pennellii 28526 species 1002699199 4073 2318 1.96296e-07 Rhagoletis zephyria 28612 species 75504221 1 0 0.0 Cyprinodon variegatus 28743 species 116262045 2 0 0.0 Salmonella enterica 28901 species 58369273 1 0 0.0 Dacrymycetales 28997 order 0 1 0 0.0 Drosophila eugracilis 29029 species 71192184 1 1 0.0 Crassostrea gigas 29159 species 144122040 4 1 0.0 Staphylococcus cohnii 29382 species 3027373 2 1 0.0 Veillonella parvula 29466 species 5316968 2 0 3.70184e-05 Lawsonia intracellularis 29546 species 29059 1 0 0.0 Spirodela polyrhiza 29656 species 138083998 1 0 0.0 Vitis vinifera 29760 species 674417686 3 2 0.0 Cladosporium cladosporioides 29917 species 672153 1 0 0.0 Cladosporium herbarum 29918 species 246362 1 0 0.0 Mucor circinelloides f. lusitanicus 29924 forma 139054 1 0 0 Diaspididae 30080 family 0 1 0 0.0 Aonidiella aurantii 30082 species 25649 2 1 0.0 Vicugna pacos 30538 species 90848392 2 0 0.0 Microcebus murinus 30608 species 255938764 1 0 0.0 Schistosoma mattheei 31246 species 340837091 1 0 0.0 Acinonyx jubatus 32536 species 74932865 1 0 0.0 Babesia divergens 32595 species 11593171 1 0 0.0 synthetic construct 32630 species 214681095 1 1 0.0 unidentified 32644 species 45652450 2 0 0.0 Atropa belladonna 33113 species 296043 1 0 0.0 Petunia axillaris 33119 species 142738 1 0 0.0 Cecidomyiidae 33406 family 0 1 1 0.0 Coscinodiscophyceae 33836 class 0 1 0 0.0 Moraxella osloensis 34062 species 16806315 9 0 0.0 Lotus japonicus 34305 species 98545884 1 1 0.0 Chaetothyriales 34395 order 0 1 1 0.0 Entomophthora muscae 34485 species 48228 2 1 0.0 Streptophyta 35493 phylum 0 4 1 0.0 Ipomoea nil 35883 species 100398807 8 3 0.0 Nicotiana glutinosa 35889 species 142326 1 1 0.0 Chaenomeles 36603 genus 0 1 0 0.0 Cydonia oblonga 36610 species 237531 1 0 0.0 Glomerales 36750 order 0 1 0 0.0 Ambrosiozyma platypodis 36918 species 36093 1 0 0.0 Silene latifolia 37657 species 3956624 1 1 0.0 Monogenea 37945 class 0 1 0 0.0 Poales 38820 order 0 1 0 0.0 Quercus robur 38942 species 4479563 3 2 0.0 Veillonella atypica 39777 species 2202810 1 1 0.0 Oryza sativa Indica Group 39946 leaf 776060630 3 1 0.0 Oryza sativa Japonica Group 39947 leaf 1062609533 3 1 0.0 Coltricia perennis 40426 species 46750 4 0 0.0 Botrytis cinerea 40559 species 6292746 1 1 0.0 Mammalia 40674 class 0 3 0 0.0 Brevundimonas 41275 genus 0 1 1 0.0 Brugia timori 42155 species 64957355 1 1 0.0 Brachybacterium faecium 43669 species 17075 1 0 0.0 Ambrosiozyma philentoma 43984 species 17296 1 0 0.0 Bdelloidea 44578 class 0 1 0 0.0 Solanum dulcamara 45834 species 246583 1 1 0.0 Pratylenchus penetrans 45929 species 225352 1 1 0.0 Deinococcus sp. 47478 species 52165 2 0 0 Solanum berthaultii 47970 species 215043 10 8 0.0 Schistosoma margrebowiei 48269 species 367421722 2 0 0.0 Poecilia latipinna 48699 species 164742946 1 1 0.0 Orchesella villosa 48706 species 47230 1 0 0.0 Lepidocyrtus paradoxus 49179 species 55996 1 1 0.0 Dicyema acuticephalum 49299 species 16639 1 0 0.0 Desulfitobacterium hafniense 49338 species 5697350 2 1 0.0 Nicotiana attenuata 49451 species 89581817 57 20 0.0 Arabis alpina 50452 species 312303512 6 3 0.0 Solanum carolinense 50511 species 132668 1 0 0.0 Solanum demissum 50514 species 3736826 150 130 0.0 Insecta 50557 class 0 2 0 0.0 Ureibacillus thermosphaericus 51173 species 3584023 1 1 0.0 Solanum sogarandinum 52705 species 27457 2 2 0.0 Enterococcus mundtii 53346 species 6862920 2 0 0.0 Ambrosiozyma ambrosiae 53487 species 18454 1 0 0.0 Plasmodium vinckei vinckei 54757 subspecies 10084816 1 0 0.0 Guillardia theta 55529 species 1474084 3 0 0.0 Dioscorea rotundata 55577 species 797371 1 0 0.0 Heterococcus 55584 genus 0 1 0 0.0 Heterococcus caespitosus 55585 species 17595 2 0 0.0 Vibrio anguillarum 55601 species 168093962 1 1 0.0 Labrus bergylta 56723 species 112958877 1 1 0.0 Muscina stabulans 57893 species 52988 2 1 0.0 Tenaxia dura 59368 species 10779 1 0 0.0 Chryseobacterium 59732 genus 0 1 0 0.0 Tribolium pusillum 59914 species 20211 1 0 0.0 Acidiphilium multivorum 62140 species 27524 2 0 0.0 Nicotiana paniculata 62141 species 70713 1 0 0.0 Saccharum spontaneum 62335 species 1397615 4 0 0.0 Miscanthus 62336 genus 0 1 0 0.0 Solanum chmielewskii 62889 species 158756 4 0 0.0 Solanum habrochaites 62890 species 1464206 8 3 0.0 Solanum neorickii 62891 species 253768 2 0 0.0 Solanum stoloniferum 62892 species 296532 2 0 0.0 Solanum polyadenium 62893 species 23646 1 1 0.0 Chenopodium quinoa 63459 species 148219361 1 0 0.0 Nostoc punctiforme PCC 73102 63737 leaf 9137054 1 0 0.0 Ficus religiosa 66387 species 201585 6 0 0 Durio zibethinus 66656 species 152781709 1 1 0.0 Schistocephalus solidus 70667 species 540297029 1 1 0.0 Naematelia encephala 71784 species 23321 1 0 0.0 Tremella indecorata 71787 species 14089 1 0 0.0 Kocuria palustris 71999 species 3075222 2 2 0.0 Ziziphus 72171 genus 0 1 0 0.0 Solanum microdontum 73574 species 35241 2 2 0.0 Solanum okadae 73575 species 21854 1 1 0.0 Eucoccidiorida 75739 order 0 1 0 0.0 Malassezia restricta 76775 species 215351 1 0 0.0 Malassezia sympodialis 76777 species 31356431 1 0 0.0 Malassezia pachydermatis 77020 species 6768694 1 1 0.0 uncultured bacterium 77133 species 2727715008 66 29 2.16484e-07 Capsicum chinense 80379 species 700557 2 0 0.0 Solanum tuberosum subsp. andigenum 80418 subspecies 137497 6 4 0.0 Linepithema humile 83485 species 73534978 3 0 0.0 Pseudoxanthomonas 83618 genus 0 1 0 0.0 Boehmeria nivea 83906 species 480161 1 1 0.0 Speleonectidae 84344 family 0 1 0 0.0 Sphingobacteriaceae 84566 family 0 1 0 0.0 Itersonilia perplexans 84742 species 68834 1 0 0.0 Trypanosoma cruzi cruzi 85057 subspecies 38291179 1 0 0.0 Laurus nobilis 85223 species 251085 1 0 0 Citrus clementina 85681 species 58010542 2 0 3.39293e-06 Blattodea 85823 order 0 1 0 0.0 Hormosira banksii 87157 species 39283 1 0 0.0 Ipomoea leptophylla 89648 species 61985 1 0 0.0 Cunninghamella bertholletiae 90251 species 34515 3 2 1.25233e-22 Camelina sativa 90675 species 198947762 1 1 0.0 Cystofilobasidiales 90883 order 0 1 0 0.0 uncultured Alphaproteobacteria bacterium 91750 species 21052502 2 1 0.0 Pleosporales 92860 order 0 1 0 0.0 Mycosphaerellaceae 93133 family 0 1 0 0.0 Cloning vector pSB4 94002 species 39902 1 0 0.0 Cloning vector pSB1 94003 species 36909 1 0 0.0 Spirometra erinaceieuropaei 99802 species 1259652904 3 3 0.0 uncultured actinomycete 100235 species 726428 1 1 0.0 uncultured eukaryote 100272 species 91708729 3 1 0 Ficus racemosa 100569 species 187891 6 0 0.0020951 Fragaria vesca subsp. vesca 101020 subspecies 70636896 1 0 0.0 Hymenolepis nana 102285 species 163021228 2 1 0.0 Thelazia callipaeda 103827 species 75604652 1 1 0.0 Solanum acaule 103871 species 48435 2 2 0.0 Protobothrops mucrosquamatus 103944 species 45257789 1 0 0.0 Uronema belkae 104536 species 19765 1 0 0.0 Tremella aurantia 105811 species 12567 1 0 0.0 Curvibasidium cygneicollum 106008 species 53145 1 0 0.0 Malus tschonoskii 106571 species 326543 2 0 0.0 Maylandia zebra 106582 species 164809351 1 1 0.0 Ovis canadensis canadensis 112262 subspecies 2590566603 3 3 0.0 Dissoconium aciculare 112489 species 25606 3 0 0.0 Hordeum vulgare subsp. vulgare 112509 subspecies 60765072 1 0 0.0 [Rhodotorula] futronensis 114766 species 5269 1 0 0.0 [Rhodotorula] nothofagi 114767 species 98059 1 0 0.0 Rhabditophanes sp. KR3021 114890 species 47291303 1 1 0.0 Goura 115653 genus 0 1 0 0.0 Penicillium biourgeianum 116969 species 32043 1 0 0.0 Protopolystoma xenopodis 117903 species 617352165 2 1 0.0 Nicotiana knightiana 118699 species 26119 1 0 0.0 Chromadorea 119089 class 0 1 0 0.0 Cinnamomum burmannii 119261 species 39948 1 0 0 Alternaria botrytis 119956 species 34237 1 1 0.0 uncultured planctomycete 120965 species 8742080 1 1 0.0 Sonneratia alba 122812 species 489171 1 0 0.0 Sonneratia apetala 122813 species 125002 1 0 0.0 Sonneratia caseolaris 122814 species 525134 1 0 0.0 Sonneratia ovata 122816 species 138310 1 0 0.0 secondary endosymbiont of Cacopsylla myrthi 126160 species 4330 1 1 0.0 Hagenius brevistylus 126207 species 18461 2 0 0.0 Hesperelaea palmeri 126429 species 826361 1 1 0.0 Enterobacteriaceae sp. 126790 species 112018 1 0 0.0 Phytophthora insolita 127442 species 85489 1 0 0.0 Saccharum hybrid cultivar 128810 species 1026375 2 0 0.0 Arachis duranensis 130453 species 114185867 1 1 0.0 Desulfomicrobium orale 132132 species 52298 1 0 0.0 Acanthaster planci 133434 species 145624799 1 1 0.0 uncultured eubacterium WD286 133619 species 1448 1 0 0.0 Zootermopsis nevadensis 136037 species 113991057 2 0 0.0 Calotropis procera 141467 species 90653 1 1 0.0 Solanum cheesmaniae 142759 species 284216 2 0 0.0 Solanum bulbocastanum 147425 species 943409 14 12 0.0 Paracoccus yeei 147645 species 9573166 4 0 2.05601e-05 Lactobacillus iners 147802 species 44647 1 0 0.0 uncultured actinobacterium 152507 species 18354929 2 1 0.0 Agaricomycetes 155619 class 0 1 0 0.0 uncultured organism 155900 species 302709580 5 2 0 Karenia brevis 156230 species 328153 1 1 0.0 uncultured Verrucomicrobia bacterium 156588 species 3386805 4 2 0.0 Trichobilharzia regenti 157069 species 701846735 2 2 0.0 Vigna angularis var. angularis 157739 varietas 522781930 4 2 0.0 Olea europaea var. sylvestris 158386 varietas 116779462 4 0 0.0 Novosphingobium resinovorum 158500 species 6955785 2 0 0.0 uncultured Caulobacter sp. 158749 species 369024 1 0 0.0 uncultured Deinococcus sp. 158789 species 188166 4 0 0 uncultured Capnocytophaga sp. 159273 species 412301 3 0 0.000477311 Fuligo septica 159720 species 40426 1 1 0.0 Solanum arnezii x Solanum hondelmannii 162493 species 614 1 0 0.0 Solanum sucrense 162494 species 17836 1 1 0.0 Entomophthora thripidum 164419 species 1923 1 0 0.0 uncultured soil bacterium 164851 species 36037472 4 0 4.24374e-91 uncultured Flavobacteriaceae bacterium 165436 species 3163776 1 0 0.0 uncultured Comamonadaceae bacterium 165437 species 2226830 1 0 0.0 Capsicum annuum var. glabriusculum 165789 varietas 320489 1 0 0.0 uncultured Chloroflexi bacterium 166587 species 7584778 1 1 0.0 Aegilops tauschii subsp. tauschii 169297 subspecies 124836517 1 1 0.0 uncultured Chlorophyta 171245 species 1329783 1 0 0.000148013 uncultured Acidobacteria bacterium 171953 species 16126537 1 0 0.0 Solanum bukasovii 172263 species 13375 1 1 0.0 Solanum phureja 172790 species 60823 7 7 0.0 Solanum gourlayi 172792 species 17745 1 1 0.0 uncultured Ascomycota 175243 species 5218695 2 0 0.0 uncultured Basidiomycota 175244 species 3888514 3 0 5.06171e-05 uncultured fungus 175245 species 124510668 12 1 0 Python bivittatus 176946 species 70653251 1 0 0.0 Coniochaeta mutabilis 177207 species 24436 1 0 0 Exidiopsis plumbescens 178504 species 1211 1 1 0.162531 Oscillatoria nigro-viridis PCC 7112 179408 leaf 8278419 4 0 0.0 Culicoides sonorensis 179676 species 209569004 2 0 0.0 Jatropha curcas 180498 species 72858209 1 1 0.0 Erynia rhizospora 181052 species 3879 1 0 0.0 Pseudopodoces humilis 181119 species 94805115 1 1 0.0 Klebsormidium subtilissimum 184584 species 17691 1 0 0.0 Caloenas nicobarica 187106 species 64703 1 0 0.0 Didunculus strigirostris 187111 species 46650 1 0 0.0 Entomobrya 187625 genus 0 1 0 0.0 Sinella 187694 genus 0 1 0 0.0 Sinella curviseta 187695 species 15813 1 0 0.0 Xanthomendoza hasseana 189619 species 9993 1 1 0.0 Tamarix androssowii 189785 species 28348 1 0 0.0 uncultured Olsenella sp. 190764 species 69476 2 0 0.0 Conexibacter woesei 191495 species 9893 1 0 0.0 Utricularia reniformis 192314 species 1010700 1 1 0.0 Pyracantha coccinea 193309 species 166180 1 0 0.0 Solanum lycopersicum var. cerasiforme 195583 varietas 119017 2 0 0.0 Crustomastix stigmatica 195967 species 18955 1 0 0.0 Nocardioides sp. JS614 196162 species 5337437 2 0 0.0 Evolvulus nuttallianus 197389 species 69325 1 0 0.0 Vannella septentrionalis 197531 species 4760 3 3 0.0 Candidatus Pelagibacter 198251 genus 0 1 0 0.0 uncultured Latescibacteria bacterium 199737 species 872641 1 1 0.0 Sphingobacteriales 200666 order 0 1 0 0.0 Rhopalosiphum aff. insertum SB-2002 202461 species 2468 1 1 0.0 Apteryx australis mantelli 202946 subspecies 1656855686 1 0 0.0 Solanum brevicaule 205532 species 29632 2 2 0.0 Solanum triflorum 205588 species 83452 5 1 0.0 uncultured Dothideomycetes 209475 species 193422 1 1 0.0 Staphylococcus nepalensis 214473 species 6098607 2 0 0.0 Larimichthys crocea 215358 species 650433141 3 2 0.0 Physalis alkekengi var. franchetii 221454 varietas 8300 2 0 0.0 Orussus abietinus 222816 species 69731816 1 1 0.0 Leptosphaeria biglobosa 'thlaspii' group 225344 leaf 32105549 1 0 0.0 Bacteroides thetaiotaomicron VPI-5482 226186 leaf 6294193 1 0 0.0 Solanum hirtum 227723 species 130191 1 0 0.0 Solanum quitoense 227725 species 69682 1 0 0.0 Celtis occidentalis 228587 species 61642 1 1 0.0 Methanobrevibacter millerae 230361 species 2548274 1 1 0.0 Tolypothrix tenuis PCC 7101 231146 leaf 9359818 1 1 0.0 Acidovorax sp. JS42 232721 species 4590217 1 0 0.0 Paracoccus sp. Ol18 235898 species 7613 1 0 0.0 Cladosporium uredinicola 237183 species 33181 1 0 0.0 uncultured Actinomycetales bacterium 239730 species 3140118 1 0 0.0 Heterococcus protonematoides 240381 species 9240 1 0 0.0 Chlorellidium tetrabotrys 243652 species 16670 1 0 0.0 Chlorellidium sp. SAG 811-1 243653 species 3113 1 0 0.0 Methylobacterium sp. iEV1 243695 species 426 1 0 0.0 Methylobacterium sp. iRV5 244194 species 446 1 0 0.0 Candida sp. CBS 5808 244347 species 570 1 0 0.0 Morus indica 248361 species 518594 3 0 0 uncultured Oxalobacteraceae bacterium 253871 species 454451 1 0 0.0 Curvibasidium pallidicorallinum 256807 species 25134 1 0 0.0 Solanum tarijense 257458 species 24695 3 3 0.0 uncultured Chroococcidiopsis sp. 259957 species 800637 1 1 0.0 Cavenderia fasciculata 261658 species 20456626 1 1 0.0 Aecidium kalanchoes 263606 species 2787 1 0 0.0 Pseudomonas savastanoi pv. phaseolicola 1448A 264730 leaf 6117738 1 0 0.0 Cutibacterium acnes KPA171202 267747 leaf 2564533 1 0 0.0 Cuterebra fontinella 269681 species 24929 1 0 0.0 Umbilicaria krascheninnikovii 279011 species 5680 1 0 0.0 Staphylococcus pseudintermedius 283734 species 8821726 3 0 0.0 uncultured anaerobic bacterium 283740 species 1586608 1 0 2.59754e-56 fungal sp. K5 284291 species 687 1 0 0 fungal sp. K23 284310 species 684 1 0 0.287757 Crustomastix sp. MBIC10709 284967 species 3505 1 0 0.0 Schizothyrium pomi 286617 species 30273 3 0 0.0 Eosentomon sakura 289450 species 6850 1 0 0.0 Halophytophthora avicenniae 289610 species 21633 1 0 0.0 Penicillium bialowiezense 293381 species 35046 1 0 0.0 Lycopersicon peruvianum var. dentatum 298685 varietas 2819 1 0 0.0 Physalis pubescens 300354 species 135657 2 0 0.0 Homidia 301513 genus 0 1 0 0.0 Physalis philadelphica 304130 species 225663 1 0 0.0 Physalis heterophylla 304155 species 75276 2 1 0.0 Aphis glycines 307491 species 258617 2 0 0.0 Eriococcus 308483 genus 0 1 0 0.0 Eriochiton 308980 genus 0 1 0 0.0 Cloning vector pSB4U 311337 species 41385 1 0 0.0 Agrobacterium vitis S4 311402 leaf 6321690 1 1 0.0 Tetrahymena thermophila SB210 312017 leaf 51537902 2 2 0.0 Solanum albicans 315333 species 49008 1 0 0.0 Solanum schenckii 315345 species 61942 1 0 0.0 Solanum verrucosum 315347 species 66041 1 1 0.0 Solanum galapagense 315350 species 193693 1 0 0.0 Aulacus 315839 genus 0 1 0 0.0 uncultured Granulicatella sp. 316089 species 361597 1 0 0.0 Solanum oplocense 317830 species 25086 1 0 0.0 Solanum yungasense 317837 species 4900 1 1 0.0 Dracunculus medinensis 318479 species 103805631 1 1 0.0 Deinococcus geothermalis DSM 11300 319795 leaf 3251231 1 1 0.0 Parastagonospora nodorum SN15 321614 leaf 18921380 1 0 0.0 bacterium ii1225 330020 species 1487 1 0 0.0 bacterium ii1346 330048 species 991 1 0 0.0 Angiostrongylus costaricensis 334426 species 262837914 1 1 0.0 Przewalskia tangutica 337188 species 179960 1 0 0.0 Cinnamomum micranthum 337465 species 159925 1 0 0 Aspidiotus nerii 337510 species 190084 3 3 0.0 uncultured Lactobacillales bacterium 339167 species 189885 2 0 0.0 uncultured Firmicutes bacterium 344338 species 12830956 1 0 0.0 Xanthomonas sp. Tibet-IB54 344990 species 1510 1 0 0.130348 Trypanosoma cruzi strain CL Brener 353153 leaf 29191166 1 0 0.0 Chrysophyllum cuneifolium 357081 species 4892 1 0 0.0 Pouteria altissima 357087 species 7525 1 0 0.0 Protaspis grandis 361427 species 5495 1 1 0.0 Iochroma cardenasianum 362354 species 166255 1 0 0.0 Iochroma lehmannii 362362 species 316593 1 0 0.0 Iochroma nitidum 362364 species 160230 1 0 0.0 Sinorhizobium medicae WSM419 366394 leaf 6851172 2 0 0.0 Cryptococcus gattii WM276 367775 leaf 28586427 1 1 0.0 Bifidobacterium adolescentis ATCC 15703 367928 leaf 2101648 1 0 0.0 Paracercomonas marina 372086 species 39393 1 0 0.0 Pantopoda 373319 order 0 1 0 0.0 Phytophthora polonica 374175 species 128058 2 0 0.0 Solanum arcanum 376710 species 406327 1 0 0.0 Lactobacillus amylotrophicus 376807 species 9363 1 0 0.0 Itersonilia pastinacae 377608 species 92441 1 0 0.0 Cinnamomum sp. Zhou 200450 382158 species 4239 1 0 0.0464321 Psyllidae sp. JMU-2006 389971 species 3941 1 0 0.0 Terriglobus 392733 genus 0 1 0 0.0 Terriglobus roseus 392734 species 4856812 1 0 6.89038e-69 Knoellia sp. O-008 395941 species 1476 1 0 0.0 Beijerinckia indica subsp. indica ATCC 9039 395963 leaf 4425739 1 0 0.0 Tenaxia cumminsii 399375 species 12688 1 0 0.0 Trithuria inconspicua 405043 species 176796 1 0 0.0 fungal endophyte 410823 species 4969356 1 0 0.0 Paramecium tetraurelia strain d4-2 412030 leaf 54246297 1 1 0.0 Penicillium cf. biourgeianum MU-214 414556 species 500 1 0 0.0 Asaia lannensis 415421 species 16307 1 1 0.0 Methylobacterium phyllosphaerae 418223 species 6328869 3 0 0.0 Mucoraceae sp. LM132 422692 species 891 1 1 0.0 Erynia ovispora 423465 species 6536 2 0 0.0 Methylobacterium radiotolerans JCM 2831 426355 leaf 6911372 2 0 0.0 Campodea augens 438502 species 5798 1 0 0.0 Pseudonocardia sp. AL041005-10 445576 species 6145216 1 0 0.0 Brachybacterium faecium DSM 4810 446465 leaf 3619028 1 0 0.0 Syphacia muris 451379 species 99117145 1 0 0.0 Cyphomyrmex costatus 456900 species 33924277 1 1 0.0 Nakazawaea 460521 genus 0 2 0 0.0 Novotelnova scorzonerae 461277 species 7022 3 1 0.0 uncultured Knoellia sp. 462200 species 15138 1 0 0.0 Ficus tikoua 463880 species 38709 1 0 0.0 Micrococcus luteus NCTC 2665 465515 leaf 2502363 1 0 0.0 Conexibacter woesei DSM 14684 469383 leaf 6362040 1 0 0.0 Toxicocladosporium irritans 470064 species 12791 1 1 0.0 Trachymyrmex cornetzi 471704 species 55240169 1 0 0.0 uncultured Termite group 1 bacterium phylotype Rs-D17 471821 leaf 1152432 1 0 0.0 Ficus sp. Moore 315 473043 species 84217 5 0 0 Ambrosiozyma sp. NRRL Y-6106 473108 species 6414 1 0 0.0 Acidobacteria bacterium AL 474947 species 1403 1 0 0.0 Acidobacteria bacterium KMR 474948 species 1413 1 0 0.0 Veillonella parvula DSM 2008 479436 leaf 2148300 3 0 0 Demodex folliculorum 481310 species 258053 1 0 0.0 Chthoniobacter flavus Ellin428 497964 leaf 8949 1 1 0.0 uncultured Flavisolibacter sp. 498726 species 90426 2 0 0.0 Rytidosperma pictum 500260 species 17407 1 0 0.0 Penicillium rubens Wisconsin 54-1255 500485 leaf 49466626 1 1 0.0 Podospora anserina S mat+ 515849 leaf 85438148 1 1 0.0 Sonneratia griffithii 516017 species 41247 1 0 0.0 Olsenella sp. F0004 519017 species 1489 1 0 0.0 Anaerococcus prevotii DSM 20548 525919 leaf 2004929 2 2 0.0 Geodermatophilus obscurus DSM 43160 526225 leaf 5329132 1 1 0.0 uncultured bacterium KM3-173-A5 526666 species 35487 1 1 0.0 Bacillus thuringiensis YBT-1518 529122 leaf 6691625 1 1 0.0 Acidovorax ebreus TPSY 535289 leaf 3797064 1 0 0.0 uncultured bacterium HF0010_09O16 542477 species 36717 1 0 0.0 uncultured bacterium HF0070_01M22 542482 species 19781 1 0 0.0 Lichtheimia hongkongensis 549293 species 53394 1 0 0.00368628 Chryseobacterium piperi 558152 species 4506620 3 0 0.0 Diadocidia ferruginosa 560722 species 18054 1 1 0.0 Icelococcus 561212 genus 0 1 0 0.0 Chitinophagaceae 563835 family 0 1 0 0.0 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 566552 leaf 2097395 2 1 0.0 iron-reducing bacterium enrichment culture clone HN72 569513 species 1443 1 0 0.0 Thermothelomyces thermophila ATCC 42464 573729 leaf 54677160 1 1 0.0 uncultured Blastomonas sp. 575414 species 147292 1 0 0.0 Diplostephium venezuelense 587525 species 163728 1 0 0.0 Acidaminococcus fermentans DSM 20731 591001 leaf 2345299 2 0 0.0 Fergusobia sp. UPG M. decora 592161 species 3185 1 0 0.0 Oecobius sp. TAB-2009 593457 species 4326 4 4 0.0454983 Tolumonas auensis DSM 9187 595494 leaf 3473183 1 1 0.0 Alicycliphilus denitrificans BC 596153 leaf 4839081 1 0 0.0 Alicycliphilus denitrificans K601 596154 leaf 5072253 1 0 0.0 uncultured Itersonilia 613075 species 2347 1 0 0.0 uncultured Terriglobus sp. 626101 species 18094 1 0 0 Cloning vector pNIGEL17 633123 species 7842 1 0 0.0250989 Chaetothyriales sp. TRN436 634192 species 2919 1 1 0.0 Cylindrocopturus sp. DDM-2009 638888 species 4254 1 0 0.0 Melanterius sp. DDM-2009 638894 species 5398 1 0 0.0 uncultured Singulisphaera sp. 651290 species 151531 2 0 0.0 Janibacter sp. Ch-106 654340 species 660 1 0 0.0 Xanthophyceae sp. IX3 656232 species 1814 1 0 0.0 Trithuria filamentosa 658028 species 231384 1 0 0.0 Leucosporidium sp. AY30 662878 species 10082 2 2 0.0 Teratosphaeriaceae 668547 family 0 1 0 0.0 Hyphomicrobium denitrificans 1NES1 670307 leaf 3808687 1 1 0.0 Propionibacterium sp. oral taxon 193 671223 species 2651088 1 1 0.0 Lichtheimia ramosa 688394 species 30951507 1 1 0.0 Methylobacterium oryzae CBMB20 693986 leaf 6528450 3 0 0.0 uncultured bacterium 92 698394 species 33281 1 1 0.0 Novosphingobium sp. PP1Y 702113 species 5318249 1 0 0.0 uncultured SAR11 cluster bacterium HF0010_09O16 710725 species 36754 1 0 0.0 Solanum x edinense 742160 species 33146 5 0 0.0 Halophytophthora polymorphica 758751 species 22613 1 0 0.0 Phycomyces blakesleeanus NRRL 1555(-) 763407 leaf 18534965 2 2 0.0 Spilogona sp. JFG-2010 768775 species 9259 1 0 0.0 T7RNA polymerase vector pGemT7cat 797065 species 6753 1 1 0.0 alpha proteobacterium HIMB5 859653 species 1343710 1 0 0.0 Agrobacterium sp. H13-3 861208 species 5587663 2 0 0.0 Psychrobacter sanguinis 861445 species 26716 4 0 0.0 Umbilicaria grisea 903552 species 12002 1 0 0.0 uncultured Zavarzinella sp. 904986 species 101096 1 1 0.0 Propionibacterium acnes 266 909952 leaf 2498816 2 0 0.0 Terriglobus roseus DSM 18391 926566 leaf 5228213 2 2 0.0 Yuchengia narymica 933054 species 38602 2 0 0.0 Blastocystis sp. subtype 4 944170 species 7228765 1 1 0.0 Goussia desseri 979873 species 12214 2 0 0.0 Morus notabilis 981085 species 29548582 11 11 6.66108e-06 Staphylococcus pseudintermedius ED99 984892 leaf 2574325 1 0 0.0 Polaribacter sejongensis 985043 species 4528599 1 1 0.0 Bacillus megaterium WSH-002 1006007 leaf 5075655 1 1 0.0 Solanum chacoense x Solanum tuberosum 1017323 species 22673 1 1 0.0 Sphingomonas sp. KC8 1030157 species 4123013 1 1 0.0 Propionibacterium acnes 6609 1031709 leaf 2561024 1 0 0.0 Pseudomonas fluorescens A506 1037911 leaf 6019944 1 0 0.0 Clostridium sp. SY8519 1042156 species 2836441 1 1 0.0 Aureobasidium subglaciale EXF-2481 1043005 leaf 16588015 1 0 0.0 Ficus sp. M. J. Moore 315 1049724 species 25646 1 0 0.00767471 Naumovozyma castellii CBS 4309 1064592 leaf 19544371 2 0 0.0 Pelagibacterium halotolerans B2 1082931 leaf 3956545 2 2 0.0 Novosphingobium pentaromativorans US6-1 1088721 leaf 5458238 1 0 0.0 Pseudonocardia sp. EC080619-01 1096856 species 7205934 1 0 0.0 Pseudonocardia sp. EC080625-04 1096868 species 6555235 1 0 0.0 Rickettsia montanensis str. OSU 85-930 1105114 leaf 1280535 1 1 0.0 Romboutsia ilealis 1115758 species 2589659 1 1 7.60044e-05 Pseudomonas sp. MC1 1123041 species 83194 1 0 0.0 Propionibacterium acnes HL096PA1 1134454 leaf 2549775 1 1 0.0 Methylobacterium sp. P9-52 1136274 species 1411 1 0 0.0 Massilia putida 1141883 species 7526900 1 1 0.0 Agrobacterium fabrum 1176649 species 36994 1 0 0.0 Ficus subincisa 1179236 species 9673 1 1 0.0 Pelosinus fermentans JBW45 1192197 leaf 5380816 1 1 0.0 uncultured Leucocortinarius 1193701 species 398 1 0 0.0 Lechevalieria sp. YIM 75758 1204188 species 986 1 1 0.0 Vannella sp. ELH6 1215641 species 1994 1 1 0.0 Phytophthora cf. insolita 1216625 species 1706 1 0 0.0 Homotomidae sp. JRC-2012 1225587 species 3476 1 0 0.0 Spondyliaspidinae sp. 1 JRC-2012 1225609 species 4189 1 0 0.0 Spondyliaspidinae sp. 2 JRC-2012 1225610 species 2666 1 0 0.0 Suillia variegata 1230148 species 8061 1 0 0.0 Umbilicaria hypococcinea 1246585 species 3593 1 0 0.0 Umbilicaria kisovana 1246587 species 3589 1 0 0.0 Umbilicaria squamosa 1246592 species 3588 1 0 0.0 Bradyrhizobium icense 1274631 species 8336922 1 1 0.0 Propionibacterium acnes hdn-1 1276648 leaf 2494562 2 0 0.0 Deinococcus antarcticus 1298767 species 1465 2 0 0.134352 Enterococcus mundtii QU 25 1300150 leaf 3353237 1 0 0.0 Nocardioides dokdonensis FR1436 1300347 leaf 4376707 1 1 0.0 Mucilaginibacter sp. PAMC 26640 1300914 species 5619473 1 1 0.0 Seira delamarei 1302329 species 4518 1 0 0.0 Sinhomidia bicolor 1302339 species 4874 1 0 0.0 Himalanura sp. FZ-2013 1304847 species 4207 1 0 0.0 Basidiomycota sp. 29 OA-2013 1321856 species 2642 1 1 0.0 Coniochaeta sp. 169 OA-2013 1321866 species 2551 1 1 0.0 Chryseobacterium gallinarum 1324352 species 4637501 1 0 0.0 Brachybacterium ginsengisoli 1331682 species 3957407 1 0 0.0 Cladosporium allicinum 1338630 species 82804 2 0 0.0 Rhizopus microsporus ATCC 52813 1340429 leaf 13805100 4 4 0.0 Terriglobus sp. SC-27 1384625 species 1460 1 0 0.134812 Labilithrix luteola 1391654 species 12192949 1 1 0.0 Melanopsichium pennsylvanicum 4 1398559 leaf 19231573 1 0 0.0 Candidatus Endomicrobium trichonymphae 1408204 species 1204572 1 0 0.0 Clostridium baratii str. Sullivan 1415775 leaf 3338630 1 0 0.0 uncultured bacterium ctg7180000001448 1425163 species 3885 1 0 0.0 Agrobacterium tumefaciens LBA4213 (Ach5) 1435057 leaf 5630690 1 0 3.49558e-05 Stictopleurus punctatonervosus 1437094 species 8487 1 1 0.0 Bifidobacterium kashiwanohense PV20-2 1447716 leaf 2372905 1 0 0.0 Pentaphyllus chrysomeloides 1470698 species 4534 1 1 0.0 Aonidiella environmental sample 1475341 species 700 1 0 0.0 Hymenobacter sp. PAMC 26554 1484116 species 5452648 2 2 0.0 Hymenobacter sp. PAMC 26628 1484118 species 5368363 1 1 0.0 Endostelium crystalliferum 1485074 species 7026 1 1 0.0 Pseudomonas sp. WCS374 1495331 species 6085054 1 0 0.0 Actinomyces succiniciruminis 1522002 species 3340948 1 0 0.0 Lawsonella clevelandensis 1528099 species 3781493 4 0 0.0 Diaphorobacter polyhydroxybutyrativorans 1546149 species 4065568 1 0 0.0 Planococcus faecalis 1598147 species 3498934 1 1 0.0 Planctomyces sp. SH-PL62 1636152 species 6784659 1 1 0.0 Pseudonocardia sp. HH130629-09 1641402 species 6300975 1 0 0.0 Devosia sp. H5989 1643450 species 4595721 1 1 0.0 Acinetobacter sp. TTH0-4 1646498 species 2964240 1 0 0.0 Massilia sp. NR 4-1 1678028 species 6361416 1 1 0.0 Pseudonocardia sp. EC080610-09 1688404 species 7131853 1 0 0.0 Paulinella longichromatophora 1708747 species 990105 1 0 0.0 Diplostephium obtusum 1716029 species 161287 1 0 0.0 Pseudarthrobacter 1742993 genus 0 1 0 0.0 Dothideomycetes sp. A552 1750882 species 2958 1 1 0.0 Elizabethkingia genomosp. 4 1756150 species 4216720 1 0 0.0 Cryptocoryneum condensatum 1763021 species 18457 1 1 0.0 Lecythophora sp. 1769358 species 15753 1 0 0.0124945 Sphingomonas sp. CC-MHH0546 1772254 species 1469 1 0 0.0 Blautia sp. YL58 1796616 species 5130267 1 0 0.0 Micrococcus sp. ALBL_223 1811305 species 4166 1 0 0.0 Binary vector pHAtC 1812835 species 14451 1 0 0 Fibrella sp. ES10-3-2-2 1834519 species 6408035 1 1 0.0 Sinorhizobium sp. RAC02 1842534 species 6626583 1 0 0.0 Auricoccus indicus 1849491 species 1747296 1 1 0.0 Phycisphaerae bacterium SM-Chi-D1 1851148 species 3869910 1 0 0.0 Klebsormidium sp. SAG 51.86 1856625 species 130962 1 0 0.0 Acidaminococcus timonensis 1871002 species 1520 1 1 0.0 Acidovorax sp. 1872122 species 96689 1 0 0.0 Brachybacterium sp. P6-10-X1 1903186 species 4385603 1 1 0.0 Sporobolomyces ficis 1911796 species 1514 1 0 0.0 Phycisphaerae bacterium L21-RPul-D3 1940790 species 2953149 1 0 0.0 Paracoccus contaminans 1945662 species 3034891 1 0 0.0 Entomobrya sp. NM07272 1972743 species 1895 1 0 0.0 Notiocoelotes palinitropus 1982836 species 6225 1 1 0.0 Chryseobacterium sp. T16E-39 2015076 species 4872888 2 0 0.0 Brachybacterium sp. VR2415 2017485 species 3569902 1 1 0.0 Blumenbachia catharinensis 2035898 species 5831 1 0 0.0 Cyclocarcina floronoides tatoro 2049386 subspecies 6166 1 1 0.0 Tydeidae gen. sp. AD864 2051819 species 9722 2 2 0.0