[ INFO] 2020-02-05 10:57:39 : Loading assembly: /DATA/majaz/_stRT_revision/_A_transrate_rep/input/PGSC_DM_v3.4_transcript-update_representative.fasta
[ INFO] 2020-02-05 10:57:42 : Analysing assembly: /DATA/majaz/_stRT_revision/_A_transrate_rep/input/PGSC_DM_v3.4_transcript-update_representative.fasta
[ INFO] 2020-02-05 10:57:42 : Results will be saved in /DATA/majaz/_stRT_revision/_A_transrate_rep/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative
[ INFO] 2020-02-05 10:57:42 : Calculating contig metrics...
[ INFO] 2020-02-05 10:57:46 : Contig metrics:
[ INFO] 2020-02-05 10:57:46 : -----------------------------------
[ INFO] 2020-02-05 10:57:46 : n seqs                        39031
[ INFO] 2020-02-05 10:57:46 : smallest                         51
[ INFO] 2020-02-05 10:57:46 : largest                        8888
[ INFO] 2020-02-05 10:57:46 : n bases                    50078136
[ INFO] 2020-02-05 10:57:46 : mean len                    1282.67
[ INFO] 2020-02-05 10:57:46 : n under 200                      87
[ INFO] 2020-02-05 10:57:46 : n over 1k                     20226
[ INFO] 2020-02-05 10:57:46 : n over 10k                        0
[ INFO] 2020-02-05 10:57:46 : n with orf                    28325
[ INFO] 2020-02-05 10:57:46 : mean orf percent               73.1
[ INFO] 2020-02-05 10:57:46 : n90                             645
[ INFO] 2020-02-05 10:57:46 : n70                            1217
[ INFO] 2020-02-05 10:57:46 : n50                            1726
[ INFO] 2020-02-05 10:57:46 : n30                            2353
[ INFO] 2020-02-05 10:57:46 : n10                            3535
[ INFO] 2020-02-05 10:57:46 : gc                              0.4
[ INFO] 2020-02-05 10:57:46 : gc skew                        0.08
[ INFO] 2020-02-05 10:57:46 : at skew                        0.01
[ INFO] 2020-02-05 10:57:46 : cpg ratio                      1.47
[ INFO] 2020-02-05 10:57:46 : bases n                       41291
[ INFO] 2020-02-05 10:57:46 : proportion n                    0.0
[ INFO] 2020-02-05 10:57:46 : linguistic complexity          0.22
[ INFO] 2020-02-05 10:57:46 : Contig metrics done in 5 seconds
[ INFO] 2020-02-05 10:57:46 : No reads provided, skipping read diagnostics
[ INFO] 2020-02-05 10:57:46 : Calculating comparative metrics...
[ INFO] 2020-02-05 10:58:23 : Comparative metrics:
[ INFO] 2020-02-05 10:58:23 : -----------------------------------
[ INFO] 2020-02-05 10:58:23 : CRBB hits                     38600
[ INFO] 2020-02-05 10:58:23 : n contigs with CRBB           38600
[ INFO] 2020-02-05 10:58:23 : p contigs with CRBB            0.99
[ INFO] 2020-02-05 10:58:23 : rbh per reference              0.78
[ INFO] 2020-02-05 10:58:23 : n refs with CRBB              37534
[ INFO] 2020-02-05 10:58:23 : p refs with CRBB               0.76
[ INFO] 2020-02-05 10:58:23 : cov25                         37387
[ INFO] 2020-02-05 10:58:23 : p cov25                        0.76
[ INFO] 2020-02-05 10:58:23 : cov50                         36379
[ INFO] 2020-02-05 10:58:23 : p cov50                        0.74
[ INFO] 2020-02-05 10:58:23 : cov75                         33634
[ INFO] 2020-02-05 10:58:23 : p cov75                        0.68
[ INFO] 2020-02-05 10:58:23 : cov85                         32200
[ INFO] 2020-02-05 10:58:23 : p cov85                        0.65
[ INFO] 2020-02-05 10:58:23 : cov95                         30187
[ INFO] 2020-02-05 10:58:23 : p cov95                        0.61
[ INFO] 2020-02-05 10:58:23 : reference coverage             0.75
[ INFO] 2020-02-05 10:58:23 : Comparative metrics done in 36 seconds
[ INFO] 2020-02-05 10:58:23 : -----------------------------------
[ INFO] 2020-02-05 10:58:23 : Writing contig metrics for each contig to /DATA/majaz/_stRT_revision/_A_transrate_rep/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative/contigs.csv
[ INFO] 2020-02-05 10:58:26 : Writing analysis results to assemblies.csv