offset+0.5*amplitude*(1+tanh(cyclePeriod*((t+phase)/cyclePeriod-floor((t+phase)/cyclePeriod))/rampDuration))-0.5*amplitude*(1+tanh((cyclePeriod*((t+phase)/cyclePeriod-floor((t+phase)/cyclePeriod))-pulseDuration)/rampDuration))+0.5*amplitude*(1+tanh((cyclePeriod*((t+phase)/cyclePeriod-floor((t+phase)/cyclePeriod))-cyclePeriod)/rampDuration))
L*q1*cP+n1*g1^a/((cP9+cP7+cNI+cT)^a+g1^a)
(m2+(m1-m2)*L)*cL_m
cL_m*(p1*L+p2)
(m3*cL+p3*cL^c/(cL^c+g3^c))/def
p3*cL^c/(cL^c+g3^c)/def
m4*cLm/def
p7*(1-L)*(1-cP)
m11*cP*L
parameter_2^parameter_7/(parameter_2^parameter_7+cT^parameter_7)*(L*q3*cP+(n4+n7*cL^e/(cL^e+g9^e))*g8/(cEC+g8))
m12*cP9_m/def
p8*cP9_m/def
(m13+m22*(1-L))*cP9
parameter_6^parameter_7/(parameter_6^parameter_7+cT^parameter_7)*(n8*(cLm+cL)^e/((cLm+cL)^e+g10^e)+n9*cP9^f/(cP9^f+g11^f))/def
m14*cP7_m/def
p9*cP7_m/def
(m15+m23*(1-L))*cP7
parameter_12^parameter_7/(parameter_12^parameter_7+cT^parameter_7)*(n10*cLm^e/(cLm^e+g12^e)+n11*cP7^b/(cP7^b+g13^b))/def
m16*cNI_m/def
p10*cNI_m/def
(m17+m24*(1-L))*cNI
n2/(1+(cL/(g5*(1+(species_3/parameter_14)^parameter_11)))^e)*g4/(cEC+g4)/def
m5*cT_m/def
p4*cT_m/def
(m6+m7*(1-L))*cT*(p5*cZTL+cZG)+m8*cT
parameter_5^parameter_7/(parameter_5^parameter_7+cT^parameter_7)*(parameter_8*parameter_4/(cEC+parameter_4)*g6^e/(cL^e+g6^e))/def
m34*cE4_m/def
p23*cE4_m/def
(m35*cE4+p25*cE4*cE3n-p21*p25*cE4*cE3n/(p26*cLUX+p21+m9*cCOP1d+m10*cCOP1n))/def
n3*g16^e/(cL^e+g16^e)/def
m26*cE3_m/def
p16*cE3_m/def
m9*cE3*cCOP1c/def
(p19*cE3-p20*cE3n)/def
(m10*cE3n*cCOP1n+m9*cE3n*cCOP1d+p25*cE4*cE3n-p21*p25*cE4*cE3n/(p26*cLUX+p21+m9*cCOP1d+m10*cCOP1n)+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/def
parameter_3^parameter_7/(parameter_3^parameter_7+cT^parameter_7)*(n13*g2/(cEC+g2)*g6^e/(cL^e+g6^e))/def
m34*cLUX_m/def
p27*cLUX_m/def
(m36*cLUX+p26*cLUX*p25*cE4*cE3n/(p26*cLUX+p21+m9*cCOP1d+m10*cCOP1n))/def
n5/def
m27*cCOP1c*(1+p15*L)
p6*cCOP1c/def
m27*cCOP1n*(1+p15*L)
n6*L*cP*cCOP1n+n14*cCOP1n
m31*(1+m33*(1-L))*cCOP1d
parameter_1^parameter_7/(parameter_1^parameter_7+cT^parameter_7)*(L*q2*cP+n12*g14/(cEC+g14)*g15^e/(cL^e+g15^e))
m18*cG_m/def
p11*cG_m/def
(m19*cG+p28*cG-p29*p28*cG/(p29+m19+p17*cE3n))/def
p12*L*cZTL*cG-p13*(1-L)*cZG
p14/def
m20*cZTL/def
m21*cZG/def
p17*cE3*cG/def
(m10*cEG*cCOP1c+p18*cEG-parameter_26*(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m10*cCOP1n+m9*cCOP1d+parameter_26))/def
p26*cLUX*p25*cE4*cE3n/(p26*cLUX+p21+m9*cCOP1d+m10*cCOP1n)/def
m10*cCOP1n*cEC+m9*cCOP1d*cEC+m32*cEC*(1+p24*L*(p28*cG/(p29+m19+p17*cE3n)+(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m10*cCOP1n+m9*cCOP1d+parameter_26))^d/((p28*cG/(p29+m19+p17*cE3n)+(p18*cEG+p17*cE3n*p28*cG/(p29+m19+p17*cE3n))/(m10*cCOP1n+m9*cCOP1d+parameter_26))^d+g7^d))
parameter_13^parameter_7/(parameter_13^parameter_7+cT^parameter_7)*parameter_24*cL^e/(cL^e+parameter_17^e)/def
m37*species_1/def
parameter_28*parameter_16^parameter_9/((0.5*(parameter_29+species_1+parameter_18-((parameter_29+species_1+parameter_18)^2-4*parameter_29*species_1)^(1/2)))^parameter_9+parameter_16^parameter_9)/def
parameter_20*species_2/def
m30*species_3*species_2/def
parameter_27/def
(parameter_25+parameter_21*L)*(1-species_4)*parameter_15^parameter_10/(parameter_15^parameter_10+species_3^parameter_10)/def
m29*species_4/def
2011-08-18T14:47:18Z
<body xmlns="http://www.w3.org/1999/xhtml">
Arabidopsis clock model P2012 from Alexandra Pokhilko; ;
Initial values updated to the limit cycle by AJM, and original light function replaced with StepFunction, March 2014.
</body>
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<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[Light],Reference=Value>
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1-<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[L],Reference=Value>
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"tanh() step function"(<CN=Root,Model=Arabidopsis clock model P2012,Reference=Time>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[offsetStep1],Reference=Value>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[amplitudeStep1],Reference=Value>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[phaseStep1],Reference=Value>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[pulseDurationStep1],Reference=Value>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[cyclePeriodStep1],Reference=Value>,<CN=Root,Model=Arabidopsis clock model P2012,Vector=Values[rampDurationStep1],Reference=Value>)
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<CN=Root,Model=Arabidopsis clock model P2012,Reference=Time> gt 312
0
1
1
0 89352475945972.58 8256740437523.593 791472970426109.4 150838278331257.6 508183570656469.5 142280124050515.7 515833598834499.9 173908362567892.3 296302292687053.7 151980784646142 85406518046343.17 242405950913744.6 93467308598820.3 302105628220637.3 398957403908881.9 59863585573452.91 575697949682929.5 48963653053194.83 42106731945341.47 90662825522505.67 575671687417917.6 51364203075751.31 109602654505155.8 15121678966231.78 40008556986304.72 52536139740993.21 39453643685959.77 171233772675471.9 134529701135613 245321470323190.2 12386355867184.54 46272942684160.96 0.5 0.5 0.5 2.6 0.35 0.29 0.04 0.4 20 0.1 0.5 0.6 0.3 0.6 9 2 0.1 0.1 0.01 0.6 0.006 0.2 0.3 1 0.04 0.3 0.5 0.7 0.1 1 0.02 0.4 0.3 0.54 0.24 0.2 0.2 0.3 0.2 0.1 0.5 0.2 0.1 1 1 0.32 0.4 0.7 0.5 0.5 3.4 0.9 0.6 0.08 0.1 0.5 0.5 0.9 0.5 0.1 28 0.3 1 0.1 0.2 13 0.6 0.3 0.3 0.4 2 2 2 2 2 2 0.13 0.27 0.1 0.5 1 0.2 0.3 0.6 0.8 0.54 0.5 10 0.1 0.14 2 0.62 17 4 1 0.1 1 0.5 0.37 11 2 0.3 0.8 2 0.1 0.9 1 1.56 3 0.6 0.4 0.4 0.03 0.4 0.1 2 2 2 2 2 0.6 0.3 0.5 0.3 0.2 0.1 1 0.3 0.2 0.5 0 0 0.5 0.2 0.1 0.1 0.2 1 0 1 0 12 24 0.05 1 1 1
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.