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349 Assays visible to you, out of a total of 372

Wenden_qPCR_clock_cFR, WT and phyA

BioDare1

Wenden_qPCR_clock_cFR, WT and phyA

Property	Value
BioDare ID	13395774721132
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.

Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BW_cFR_qPCR, WT and phyA data for upload.xls, BW_cFR_qPCR, WT and phyA data.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:58, Last updated: 23rd Jul 2026 at 13:12

CCA1 and CCR2 markers in elf4 mutant under Far Red light

BioDare1

CCA1 and CCR2 markers in elf4 mutant under Far Red light

Property	Value
BioDare ID	12725469475452
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the CCA1 and CCR2 ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv, quantification.xls, rawdata.1.xls, rawdata.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:53, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 6

BioDare1

Clock genes under Far Red light - 6

Property	Value
BioDare ID	12730680847492
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of CCA1 and CCR2 in phyb, elf3-4, elf4-1 and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, FRLuc6RawData.1.xls, FRLuc6RawData.xls, FRLuc6RawData.xls_imported, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:56, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 5

BioDare1

Clock genes under Far Red light - 5

Property	Value
BioDare ID	12725464084711
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the main clock markers in elf4, elf3, gi ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, FRLuc5Rawdata.1.xls, FRLuc5Rawdata.xls, FRLuc5Rawdata.xls_imported, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:51, Last updated: 23rd Jul 2026 at 13:12

Clock genes under Far Red light - 3

BioDare1

Clock genes under Far Red light - 3

Property	Value
BioDare ID	12723746109930
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD

Purpose

Analysis of the main clock markers under strict FR ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.txt, Sample_list.csv, rawdata.1.xls, rawdata.xls, rawdata.xls_imported.xls

Snapshots: No snapshots

Created: 19th Jun 2026 at 09:49, Last updated: 23rd Jul 2026 at 13:12

080115H1

BioDare1

080115H1

Property	Value
BioDare ID	2629
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H1_log.xlsx, 080115H1_metamorph.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:13, Last updated: 23rd Jul 2026 at 13:12

080115H2

BioDare1

080115H2

Property	Value
BioDare ID	2630
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 080115H2_LOG.xlsx, 080115H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:11, Last updated: 23rd Jul 2026 at 13:12

210814H2

BioDare1

210814H2

Property	Value
BioDare ID	1926
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x7 light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

Partner experiment: 210814H1

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H2_LOG.xlsx, 210814H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:07, Last updated: 23rd Jul 2026 at 13:12

210814H1

BioDare1

210814H1

Property	Value
BioDare ID	1925
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x7, Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 210814H1_LOG.xlsx, 210814H1_metamorph.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:09, Last updated: 23rd Jul 2026 at 13:12

190614H1

BioDare1

190614H1

Property	Value
BioDare ID	1642
Author	Yvette Wilson
Institution
License

Description

Plants entrained in 12L 12D white light.

Experimental conditions (Red and Blue) 12 hours light (90umolm-2s-1): 12 hours shady dark (6 umolm-2s-1) x4, constant light x3. Dawn is at ZT0 and dusk (shady dark) is at ZT12.

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H1_metamorph.xlsx, 290614H1_LOG.xlsx, BioDare_metadata.json, Readme.md, SCRIPT.CSV, SCRIPT01.CSV, SCRIPT02.csv, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:05, Last updated: 23rd Jul 2026 at 13:12

190614H2

BioDare1

190614H2

Property	Value
BioDare ID	1643
Author	Yvette Wilson
Institution
License

Description

Experimental conditions (Red and Blue) 12 hours light : 12 hours dark x4 followed by 3 days constant light. light is at 90umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)

Purpose

Comparison of Light:Shady night versus standard lights ON/OFF to dissect the role of photoreceptors and photosynthesis in the circadian clock.

Comments

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: TiMet shady nights

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 190614H2_LOG.xlsx, 190614H2_metamorph.xlsx, BioDare_metadata.json, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 15:03, Last updated: 23rd Jul 2026 at 13:12

270313H1: 21L 7Dx4 LLx3 (T-28)

BioDare1

270313H1: 21L 7Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13649842953637
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 21L 7D Experimental conditions: 21L7Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H1.csv, 270313H1.rgn, 270313H1_IMG_21L7D.csv, BioDare_metadata.json, RAW_270313H1.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:20, Last updated: 23rd Jul 2026 at 13:12

200313H2: 7L 21Dx4 LLx3 (T-28)

BioDare1

200313H2: 7L 21Dx4 LLx3 (T-28)

Property	Value
BioDare ID	13643892291642
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 7L 21D Experimental conditions: 7L21Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime on imaging day 2 and day 3 appeared to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H1_7L21D.csv, 200313H2.rgn, 200313H2_IMG_7L21D.csv, BioDare_metadata.json, RAW_200313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:15, Last updated: 23rd Jul 2026 at 13:12

290313H2: 15L 5Dx4 LLx3

BioDare1

290313H2: 15L 5Dx4 LLx3

Property	Value
BioDare ID	13649886952409
Author	Wei Ven Tee
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 15L 5D Experimental conditions: 15L 5Dx4 LLx3

Purpose

To test whether cca1/lhy double mutant can adjust to change in photoperiod in T-cycle

Comments

5mins of light at the end of daytime during the first three imaging days appear to be absent, using the ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 290313H2.rgn, 290313H2_15L5D_1.csv, 290313H2_15L5D_2.csv, 290313H2_15L5D_IMG.csv, BioDare_metadata.json, RAW_290313H2.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 14:08, Last updated: 23rd Jul 2026 at 13:12

270313H3: 12L-12Dx4 LLx3

BioDare1

270313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13650039169340
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 270313H3.rgn, 270313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:49, Last updated: 23rd Jul 2026 at 13:12

200313H3: 12L-12Dx4 LLx3

BioDare1

200313H3: 12L-12Dx4 LLx3

Property	Value
BioDare ID	13644021710933
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 ('white')

Purpose

'White' (red+blue) light control experiment for the phytochrome and cryptochrome experiments

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 200313H3.rgn, 200313H3_12L12D_x4_LLx3_White.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:52, Last updated: 23rd Jul 2026 at 13:12

060213H3: 12B-12Dx4 BBx3

BioDare1

060213H3: 12B-12Dx4 BBx3

Property	Value
BioDare ID	13615365050841
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Imaging script started at ZT+7mins, therefore ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 060213H3 Raw Data.2.xlsx, 060213H3.rgn, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:45, Last updated: 23rd Jul 2026 at 13:12

030413H3: 12B-12Dx4 BB3

BioDare1

030413H3: 12B-12Dx4 BB3

Property	Value
BioDare ID	13661271159675
Author	Jamie Carrington
Institution	University of Edinburgh
License	CC_BY

Description

Plants entrained in 12L 12D white light Experimental conditions: 12L-12Dx4 LLx3 (Blue)

Purpose

Test how the cryptochromes interact with the circadian clock (WT, lhy/cca1 double mutant and lhy/cca1/gi triple mutant)

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 030413H3.rgn, 030413H3_12L12D_x4_LLx3_Blue.csv, BioDare_metadata.json, Raw Data.xlsx, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:47, Last updated: 23rd Jul 2026 at 13:12

AT0048 4x 18:6-DD

BioDare1

AT0048 4x 18:6-DD

Property	Value
BioDare ID	12730752301671
Author	Adrian Thomson
Institution	University of Edinburgh
License	CC_BY

Description

4 days of 18hrs light, 6hrs dark into 3 days constant dark

Purpose

changes to photoperiod

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Millar Andrew

Study: Millar et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: AT0048.1.xls, AT0048.rgn, AT0048.xls_imported, AT0048_BRASS.xls, AT0048_BRASSDerandomized.xls, BioDare_metadata.json, Readme.md, STANDARD_DATAFILE.1.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:31, Last updated: 23rd Jul 2026 at 13:12

BW-detached_LL-LL_#14

BioDare1

BW-detached_LL-LL_#14

Property	Value
BioDare ID	13394382079593
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 14 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_2.mat, Plant14.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:21, Last updated: 23rd Jul 2026 at 13:12

BW-detached_LL-LL_#16

BioDare1

BW-detached_LL-LL_#16

Property	Value
BioDare ID	13394383188744
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown and imaged under constant light. Sample number 16 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_5.mat, Plant16.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:17, Last updated: 23rd Jul 2026 at 13:12

BW-detached_LD-LL_#06

BioDare1

BW-detached_LD-LL_#06

Property	Value
BioDare ID	13394381111502
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 06 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LDintoLL_3.mat, Plant06.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:19, Last updated: 23rd Jul 2026 at 13:12

BW-detached_LD-LL_#03

BioDare1

BW-detached_LD-LL_#03

Property	Value
BioDare ID	13394379875121
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Detached leaves of CCA1:LUC grown in LD and imaged under constant light. Sample number 03 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LDgrownLLimaged_7.mat, Plant03.txt, README.rtf, Readme.md, Sample_list.csv, Toner PNAS 12 all.pdf

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:15, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LL-LL_#56

BioDare1

BW-intact_LL-LL_#56

Property	Value
BioDare ID	13394446929060
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 56 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_6.mat, Plant56.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:11, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LL-LL_#46

BioDare1

BW-intact_LL-LL_#46

Property	Value
BioDare ID	13394446784669
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 46 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_4.mat, Plant46.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:13, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LL-LD_#31

BioDare1

BW-intact_LL-LD_#31

Property	Value
BioDare ID	13394443003897
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown under constant light and imaged under LD. Plant number 31 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LLintoLD_22.mat, Plant31.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:07, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LL-LL_#37

BioDare1

BW-intact_LL-LL_#37

Property	Value
BioDare ID	13394444364628
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 37 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_6.mat, Plant37.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:09, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LL-LL_#58

BioDare1

BW-intact_LL-LL_#58

Property	Value
BioDare ID	13394446996851
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown and imaged under constant light. Sample number 58 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

Testing ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LL_4.mat, Plant58.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:03, Last updated: 23rd Jul 2026 at 13:12

BW-intact_LD-LL_#23

BioDare1

BW-intact_LD-LL_#23

Property	Value
BioDare ID	13394434885385
Author	Benedicte Wenden
Institution	University of Edinburgh
License	CC_BY

Description

Intact leaves of CCA1:LUC grown under LD and imaged under constant light. Sample number 23 of Table S1 in the 2012 PNAS paper "Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf". The paper is attached as a file to sample #03.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Wenden Benedicte

Study: Wenden et al. (2012)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata.json, CCA1LDintoLL_4.mat, Plant23.txt, README.rtf, Readme.md, Sample_list.csv

Snapshots: No snapshots

Created: 18th Jun 2026 at 13:05, Last updated: 23rd Jul 2026 at 13:12

SDtoLD 260410

BioDare1

SDtoLD 260410

Property	Value
BioDare ID	13982031569136
Author	Laura Dixon
Institution	University of Edinburgh
License	CC_BY

Description

pTOC plate 0683 pCAB plate0684 LHY plate 0685 control plate 0686 TOC plate0687 pLHY plate 0688

Purpose

Re-entrainment dynamics during the transition between light:dark cycles with different photoperiods, comparing Arabidopsis thaliana and Ostreococcus tauri. This expt in O. tauri ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Dixon Laura

Study: Dixon et al. (2014)

Organisms: Ostreococcus tauri

SOPs: No SOPs

Data files: BioDare_metadata.json, LHY 0685 normalised.xls, Ot data summary for BioDare 2014 v3.1.xls, Readme.md, STANDARD_DATAFILE.2.txt, STANDARD_RAWDATAFILE.2.txt, Sample_list.csv, TOC normalised.xls, control plate 0686Derandomized.xls, pCAB plate0684Derandomized.xls, pLHY normalised.xls, pTOC 0683 normalised.xls, summary.xls

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:55, Last updated: 23rd Jul 2026 at 13:12

Assays

Filters ×

Wenden_qPCR_clock_cFR, WT and phyA

Description

CCA1 and CCR2 markers in elf4 mutant under Far Red light

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Clock genes under Far Red light - 6

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Clock genes under Far Red light - 5

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Clock genes under Far Red light - 3

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080115H1

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080115H2

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210814H2

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210814H1

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190614H1

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190614H2

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270313H1: 21L 7Dx4 LLx3 (T-28)

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200313H2: 7L 21Dx4 LLx3 (T-28)

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290313H2: 15L 5Dx4 LLx3

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270313H3: 12L-12Dx4 LLx3

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200313H3: 12L-12Dx4 LLx3

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060213H3: 12B-12Dx4 BBx3

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030413H3: 12B-12Dx4 BB3

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AT0048 4x 18:6-DD

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BW-detached_LL-LL_#14

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BW-detached_LL-LL_#16

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BW-detached_LD-LL_#06

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BW-detached_LD-LL_#03

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